Mycobacterium tuberculosis strain:Mtb lineages | i... (ID 975069) - BioProject

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Accession: PRJNA975069 ID: 975069

Mycobacterium tuberculosis strain:Mtb lineages | isolate:Mtb lineages and sub-lineages

Mycobacterium tuberculosis strain:Mtb lineages | isolate:Mtb lineages and sub-lineages Genome sequencing and assembly

See Genome Information for Mycobacterium tuberculosis

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3176 additional projects are related by organism.

The aim of the study was to did a comparative genomic diversity, transmission dynamic and drug resistance analysis among PTB and TBLN cases using Illumina NovaSeq6000 WGS technique.

Accession	PRJNA975069
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Mycobacterium tuberculosis[Taxonomy ID: 1773] Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis
Publications	Mekonnen D et al., "Comparative whole-genome sequence analysis of Mycobacterium tuberculosis isolated from pulmonary tuberculosis and tuberculous lymphadenitis patients in Northwest Ethiopia.", Front Microbiol, 2023;14:1211267
Grants	"International collaboration" (Grant ID 3, Institute of Carlos III, Madrid Spain) "IFCC- Professional Scientific exchange program" (Grant ID 2, IFCC) "Mega Project" (Grant ID I, Bahir Dar University-Institute of Biotechnology)
Submission	Registration date: 10-Jul-2023 Bahir Dar University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	144
Publications
PubMed	1
PMC	1
Other datasets
BioSample	146
Assembly	144

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

144
144

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_030417495.1	JASWDG000000000	SAMN35311731	ET2022-2323	Actinomadura geliboluensis
GCA_030417455.1	JASWDI000000000	SAMN35311674	ET20222346	Brevibacillus nitrificans
GCA_030417435.1	JASWDE000000000	SAMN35311736	ET2022-2345	Mycobacterium simiae
GCA_030417875.1	JASWDC000000000	SAMN35311605	ET20221002	Mycobacterium tuberculosis
GCA_030417855.1	JASWDD000000000	SAMN35311604	ET20221001	Mycobacterium tuberculosis
GCA_030417825.1	JASWDB000000000	SAMN35311606	ET20221005	Mycobacterium tuberculosis
GCA_030417815.1	JASWDA000000000	SAMN35311607	ET20221006	Mycobacterium tuberculosis
GCA_030417785.1	JASWCZ000000000	SAMN35311608	ET20221012	Mycobacterium tuberculosis
GCA_030417765.1	JASWCY000000000	SAMN35311609	ET20221014	Mycobacterium tuberculosis
GCA_030417755.1	JASWCX000000000	SAMN35311611	ET20221024	Mycobacterium tuberculosis
GCA_030417735.1	JASWCW000000000	SAMN35311612	ET20221025	Mycobacterium tuberculosis
GCA_030417715.1	JASWCV000000000	SAMN35311613	ET20221037	Mycobacterium tuberculosis
GCA_030417675.1	JASWCT000000000	SAMN35311615	ET20221051	Mycobacterium tuberculosis
GCA_030417685.1	JASWCU000000000	SAMN35311614	ET20221038	Mycobacterium tuberculosis
GCA_030417645.1	JASWCQ000000000	SAMN35311619	ET20221058	Mycobacterium tuberculosis
GCA_030417395.1	JASWCS000000000	SAMN35311617	ET20221054	Mycobacterium tuberculosis
GCA_030417345.1	JASWCO000000000	SAMN35311621	ET20221062	Mycobacterium tuberculosis
GCA_030417355.1	JASWCR000000000	SAMN35311618	ET20221055	Mycobacterium tuberculosis
GCA_030417335.1	JASWCN000000000	SAMN35311622	ET20221063	Mycobacterium tuberculosis
GCA_030417315.1	JASWCL000000000	SAMN35311625	ET20221083	Mycobacterium tuberculosis
GCA_030417295.1	JASWCP000000000	SAMN35311620	ET20221060	Mycobacterium tuberculosis
GCA_030417275.1	JASWCM000000000	SAMN35311623	ET20221066	Mycobacterium tuberculosis
GCA_030417245.1	JASWCK000000000	SAMN35311626	ET20221094	Mycobacterium tuberculosis
GCA_030417215.1	JASWCJ000000000	SAMN35311628	ET20221109	Mycobacterium tuberculosis
GCA_030417195.1	JASWCI000000000	SAMN35311629	ET20221110	Mycobacterium tuberculosis
GCA_030417205.1	JASWCC000000000	SAMN35311640	ET20221180	Mycobacterium tuberculosis
GCA_030417175.1	JASWCH000000000	SAMN35311630	ET20221138	Mycobacterium tuberculosis
GCA_030417155.1	JASWCE000000000	SAMN35311638	ET20221169	Mycobacterium tuberculosis
GCA_030417125.1	JASWCG000000000	SAMN35311631	ET20221146	Mycobacterium tuberculosis
GCA_030417115.1	JASWCF000000000	SAMN35311635	ET20221158	Mycobacterium tuberculosis
GCA_030417095.1	JASWCD000000000	SAMN35311639	ET20221173	Mycobacterium tuberculosis
GCA_030417065.1	JASWCA000000000	SAMN35311642	ET20221188	Mycobacterium tuberculosis
GCA_030417055.1	JASWCB000000000	SAMN35311641	ET20221185	Mycobacterium tuberculosis
GCA_030417025.1	JASWBY000000000	SAMN35311644	ET20222001	Mycobacterium tuberculosis
GCA_030417015.1	JASWBZ000000000	SAMN35311643	ET20221199	Mycobacterium tuberculosis
GCA_030416995.1	JASWBX000000000	SAMN35311645	ET20222003	Mycobacterium tuberculosis
GCA_030416975.1	JASWBW000000000	SAMN35311646	ET20222008	Mycobacterium tuberculosis
GCA_030416935.1	JASWBS000000000	SAMN35311650	ET20222022	Mycobacterium tuberculosis
GCA_030416945.1	JASWBV000000000	SAMN35311647	ET20222011	Mycobacterium tuberculosis
GCA_030416915.1	JASWBU000000000	SAMN35311648	ET20222014	Mycobacterium tuberculosis
GCA_030416895.1	JASWBT000000000	SAMN35311649	ET20222019	Mycobacterium tuberculosis
GCA_030416875.1	JASWBR000000000	SAMN35311651	ET20222029	Mycobacterium tuberculosis
GCA_030416855.1	JASWBQ000000000	SAMN35311653	ET20222043	Mycobacterium tuberculosis
GCA_030416825.1	JASWBP000000000	SAMN35311655	ET20222049	Mycobacterium tuberculosis
GCA_030416815.1	JASWBN000000000	SAMN35311658	ET20222082	Mycobacterium tuberculosis
GCA_030416795.1	JASWBO000000000	SAMN35311656	ET20222050	Mycobacterium tuberculosis
GCA_030416775.1	JASWBM000000000	SAMN35311659	ET20222086	Mycobacterium tuberculosis
GCA_030416755.1	JASWBL000000000	SAMN35311660	ET20222087	Mycobacterium tuberculosis
GCA_030416735.1	JASWBK000000000	SAMN35311662	ET20222094	Mycobacterium tuberculosis
GCA_030416705.1	JASWBI000000000	SAMN35311670	ET20222334	Mycobacterium tuberculosis
GCA_030416695.1	JASWBJ000000000	SAMN35311664	ET20222195	Mycobacterium tuberculosis
GCA_030416675.1	JASWBH000000000	SAMN35311671	ET20222337	Mycobacterium tuberculosis
GCA_030416655.1	JASWBF000000000	SAMN35311676	ET20222364	Mycobacterium tuberculosis
GCA_030416625.1	JASWBG000000000	SAMN35311675	ET20222359	Mycobacterium tuberculosis
GCA_030416615.1	JASWBE000000000	SAMN35311677	ET20222365	Mycobacterium tuberculosis
GCA_030416595.1	JASWBD000000000	SAMN35311678	ET20222372	Mycobacterium tuberculosis
GCA_030416575.1	JASWBC000000000	SAMN35311679	ET20222373	Mycobacterium tuberculosis
GCA_030416555.1	JASWBB000000000	SAMN35311680	ET20222375	Mycobacterium tuberculosis
GCA_030416525.1	JASWAZ000000000	SAMN35311682	ET20222412	Mycobacterium tuberculosis
GCA_030416515.1	JASWBA000000000	SAMN35311681	ET20222410	Mycobacterium tuberculosis
GCA_030416495.1	JASWAY000000000	SAMN35311683	ET20222413	Mycobacterium tuberculosis
GCA_030416475.1	JASWAX000000000	SAMN35311684	ET20222421	Mycobacterium tuberculosis
GCA_030416435.1	JASWAW000000000	SAMN35311685	ET20222435	Mycobacterium tuberculosis
GCA_030416445.1	JASWAV000000000	SAMN35311686	ET20222453	Mycobacterium tuberculosis
GCA_030416405.1	JASWAU000000000	SAMN35311688	ET20225187	Mycobacterium tuberculosis
GCA_030416395.1	JASWAT000000000	SAMN35311689	ET20225221	Mycobacterium tuberculosis
GCA_030416375.1	JASWAS000000000	SAMN35311690	ET20225223	Mycobacterium tuberculosis
GCA_030416355.1	JASWAR000000000	SAMN35311691	ET2022-1003	Mycobacterium tuberculosis
GCA_030416325.1	JASWAP000000000	SAMN35311693	ET2022-1015	Mycobacterium tuberculosis
GCA_030416315.1	JASWAQ000000000	SAMN35311692	ET2022-1013	Mycobacterium tuberculosis
GCA_030416295.1	JASWAO000000000	SAMN35311694	ET2022-1017	Mycobacterium tuberculosis
GCA_030416275.1	JASWAM000000000	SAMN35311696	ET2022-1027	Mycobacterium tuberculosis
GCA_030416255.1	JASWAN000000000	SAMN35311695	ET2022-1021	Mycobacterium tuberculosis
GCA_030416235.1	JASWAL000000000	SAMN35311697	ET2022-1045	Mycobacterium tuberculosis
GCA_030416205.1	JASWAJ000000000	SAMN35311699	ET2022-1057	Mycobacterium tuberculosis
GCA_030416195.1	JASWAK000000000	SAMN35311698	ET2022-1046	Mycobacterium tuberculosis
GCA_030416165.1	JASWAI000000000	SAMN35311700	ET2022-1061	Mycobacterium tuberculosis
GCA_030416155.1	JASWAH000000000	SAMN35311702	ET2022-1067	Mycobacterium tuberculosis
GCA_030416135.1	JASWAG000000000	SAMN35311703	ET2022-1077	Mycobacterium tuberculosis
GCA_030416115.1	JASWAE000000000	SAMN35311705	ET2022-1082	Mycobacterium tuberculosis
GCA_030416095.1	JASWAF000000000	SAMN35311704	ET2022-1078	Mycobacterium tuberculosis
GCA_030416065.1	JASWAC000000000	SAMN35311707	ET2022-1090	Mycobacterium tuberculosis
GCA_030416055.1	JASWAD000000000	SAMN35311706	ET2022-1084	Mycobacterium tuberculosis
GCA_030416035.1	JASVZZ000000000	SAMN35311712	ET2022-1159	Mycobacterium tuberculosis
GCA_030416015.1	JASWAB000000000	SAMN35311710	ET2022-1135	Mycobacterium tuberculosis
GCA_030415995.1	JASWAA000000000	SAMN35311711	ET2022-1155	Mycobacterium tuberculosis
GCA_030415975.1	JASVZY000000000	SAMN35311713	ET2022-1161	Mycobacterium tuberculosis
GCA_030415945.1	JASVZX000000000	SAMN35311714	ET2022-1165	Mycobacterium tuberculosis
GCA_030415935.1	JASVZW000000000	SAMN35311715	ET2022-1196	Mycobacterium tuberculosis
GCA_030415915.1	JASVZV000000000	SAMN35311717	ET2022-2002	Mycobacterium tuberculosis
GCA_030415885.1	JASVZS000000000	SAMN35311721	ET2022-2031	Mycobacterium tuberculosis
GCA_030415875.1	JASVZU000000000	SAMN35311718	ET2022-2006	Mycobacterium tuberculosis
GCA_030415845.1	JASVZR000000000	SAMN35311723	ET2022-2044	Mycobacterium tuberculosis
GCA_030415835.1	JASVZT000000000	SAMN35311719	ET2022-2013	Mycobacterium tuberculosis
GCA_030415805.1	JASVZM000000000	SAMN35311728	ET2022-2099	Mycobacterium tuberculosis
GCA_030415795.1	JASVZO000000000	SAMN35311726	ET2022-2079	Mycobacterium tuberculosis
GCA_030415755.1	JASVZQ000000000	SAMN35311724	ET2022-2051	Mycobacterium tuberculosis
GCA_030415765.1	JASVZP000000000	SAMN35311725	ET2022-2077	Mycobacterium tuberculosis
GCA_030415735.1	JASVZN000000000	SAMN35311727	ET2022-2084	Mycobacterium tuberculosis
GCA_030415695.1	JASVZI000000000	SAMN35311735	ET2022-2343	Mycobacterium tuberculosis
GCA_030415675.1	JASVZL000000000	SAMN35311729	ET2022-2100	Mycobacterium tuberculosis
GCA_030415665.1	JASVZH000000000	SAMN35311734	ET2022-2341	Mycobacterium tuberculosis
GCA_030415645.1	JASVZK000000000	SAMN35311730	ET2022-2312	Mycobacterium tuberculosis
GCA_030415635.1	JASVZJ000000000	SAMN35311737	ET2022-2348	Mycobacterium tuberculosis
GCA_030415575.1	JASVZG000000000	SAMN35311739	ET2022-2356	Mycobacterium tuberculosis
GCA_030415585.1	JASVZA000000000	SAMN35311741	ET2022-2362	Mycobacterium tuberculosis
GCA_030415565.1	JASVZE000000000	SAMN35311740	ET2022-2358	Mycobacterium tuberculosis
GCA_030415555.1	JASVZF000000000	SAMN35311738	ET2022-2353	Mycobacterium tuberculosis
GCA_030415535.1	JASVZD000000000	SAMN35311742	ET2022-2367	Mycobacterium tuberculosis
GCA_030415485.1	JASVZC000000000	SAMN35311743	ET2022-2432	Mycobacterium tuberculosis
GCA_030415445.1	JASVYX000000000	SAMN35311748	ET2022-5194	Mycobacterium tuberculosis
GCA_030415465.1	JASVZB000000000	SAMN35311744	ET2022-2441	Mycobacterium tuberculosis
GCA_030415455.1	JASVYY000000000	SAMN35311749	ET2022-5242	Mycobacterium tuberculosis
GCA_030415435.1	JASVYZ000000000	SAMN35311745	ET2022-2452	Mycobacterium tuberculosis
GCA_030577075.1	JAULBA000000000	SAMN35311747	ET2022-5182	Mycobacterium tuberculosis
GCA_030709875.1	JAUUEM000000000	SAMN35311654	ET20222047	Mycobacterium tuberculosis
GCA_030709775.1	JAUUEO000000000	SAMN35311616	ET20221052	Mycobacterium tuberculosis
GCA_030709755.1	JAUUEN000000000	SAMN35311633	ET20221150	Mycobacterium tuberculosis
GCA_030709725.1	JAUJFJ000000000	SAMN35311661	ET20222093	Mycobacterium tuberculosis
GCA_030709695.1	JAUUEL000000000	SAMN35311701	ET2022-1064	Mycobacterium tuberculosis
GCA_030709655.1	JAUUEK000000000	SAMN35311746	ET2022-5175	Mycobacterium tuberculosis
GCA_033439645.1	JAUUFB000000000	SAMN35311610	ET20221018	Mycobacterium tuberculosis
GCA_033439625.1	JAUUEY000000000	SAMN35311632	ET20221149	Mycobacterium tuberculosis
GCA_033439605.1	JAUUFA000000000	SAMN35311624	ET20221070	Mycobacterium tuberculosis
GCA_033439585.1	JAUUEZ000000000	SAMN35311627	ET20221098	Mycobacterium tuberculosis
GCA_033439565.1	JAUUEX000000000	SAMN35311634	ET20221153	Mycobacterium tuberculosis
GCA_033439545.1	JAUUEW000000000	SAMN35311636	ET20221160	Mycobacterium tuberculosis
GCA_033439525.1	JAUUEV000000000	SAMN35311637	ET20221163	Mycobacterium tuberculosis
GCA_033439505.1	JAUUEU000000000	SAMN35311657	ET20222076	Mycobacterium tuberculosis
GCA_033439485.1	JAUUET000000000	SAMN35311663	ET20222097	Mycobacterium tuberculosis
GCA_033439465.1	JAUUES000000000	SAMN35311687	ET20225183	Mycobacterium tuberculosis
GCA_033439425.1	JAUUER000000000	SAMN35311708	ET2022-1111	Mycobacterium tuberculosis
GCA_033439385.1	JAUUEQ000000000	SAMN35311709	ET2022-1127	Mycobacterium tuberculosis
GCA_033439365.1	JAUUEP000000000	SAMN35311716	ET2022-1200	Mycobacterium tuberculosis
GCA_030417635.1	JASWDP000000000	SAMN35311652	ET20222033	Mycolicibacterium fortuitum
GCA_030417615.1	JASWDO000000000	SAMN35311665	ET20222302	Mycolicibacterium fortuitum
GCA_030417565.1	JASWDN000000000	SAMN35311666	ET20222306	Mycolicibacterium fortuitum
GCA_030417555.1	JASWDM000000000	SAMN35311667	ET20222317	Mycolicibacterium fortuitum
GCA_030417535.1	JASWDK000000000	SAMN35311669	ET20222331	Mycolicibacterium fortuitum
GCA_030417545.1	JASWDL000000000	SAMN35311668	ET20222330	Mycolicibacterium fortuitum
GCA_030417415.1	JASWDF000000000	SAMN35311732	ET2022-2333	Mycolicibacterium fortuitum
GCA_030417445.1	JASWDH000000000	SAMN35311720	ET2022-2017	Mycolicibacterium fortuitum
GCA_030709715.1	JAUJFK000000000	SAMN35311673	ET20222339	Nocardia nova
GCA_030417515.1	JASWDJ000000000	SAMN35311672	ET20222338	Streptomyces cacaoi

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Mycobacterium tuberculosis strain:Mtb lineages | isolate:Mtb lineages and sub-lineages

Mycobacterium tuberculosis strain:Mtb lineages | isolate:Mtb lineages and sub-lineages Genome sequencing and assembly

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